Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs73192105 chr7:105167945 T/C 6.69E-5 174 20.28 30.45 2.28 KM Plot
PCPG rs73192107 chr7:105168095 G/A 6.25E-5 175 20.28 29.43 2.28 KM Plot
PCPG rs73192125 chr7:105175068 A/C 7.98E-5 171 20.2 29.88 2.28 KM Plot
PCPG rs73192250 chr13:54103161 C/T 0.000255 176 25.53 19.72 3.17 KM Plot
PCPG rs73192256 chr13:54113190 G/T 0.000274 175 25.53 19.57 3.17 KM Plot
PCPG rs73192257 chr13:54120244 C/T 0.000255 176 25.53 19.72 3.17 KM Plot
PCPG rs73192261 chr13:54132587 G/A 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs73192266 chr13:54143316 T/G 0.000263 175 25.6 19.72 3.17 KM Plot
PCPG rs73192268 chr13:54144117 G/A 0.000263 175 25.6 19.72 3.17 KM Plot
PCPG rs73192275 chr13:54146240 C/T 0.000245 176 25.6 19.87 3.17 KM Plot
PCPG rs73192278 chr13:54153287 C/T 0.000227 177 25.67 19.87 3.17 KM Plot
PCPG rs73192288 chr13:54163443 A/G 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs73192295 chr13:54167932 C/T 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs73192297 chr13:54169070 A/G 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs73193903 chr13:54179962 A/C 0.000222 178 25.67 20.17 3.17 KM Plot